Running QIIME2 commands into terminal


Let me preface my question by saying that I am very new to programming anything outside of R.

I am running QIIME2 to do data analysis and am awkwardly copy and pasting from a text document to the terminal. It seems that I should be able to run my commands using Atom and Script. As shown here, QIME2 is run through a conda environment.

Would anyone be able to help me get this started? I hope I’ve given enough information.


@BrandonDKayser, if you don’t get the input you’re looking for here, you might also post to the QIIME 2 Forum.