Atom will not pipe an output or read a file in the same directory


I am doing some bash scripting and I can not get Atom to read a file in or pipe results out, I am using the package script-runner, this is where you press Ctrl+Shift+B the script runs right in Atom. Below is an example.

while read output; do echo output
done < ipsin.csv


Piping input into Atom is a known issue: