Currently using Atom Version 0.188.0 (0.188.0)
While in tree view, if you have a file open, and then you right click a different file and do something with it (e.g. delete in my case, found out the hard way) and it can delete the active file that is being used, in addition to the one that was selected.
Sorry if the description of what’s going on is strange, I’m not 100% sure how to describe it. Let me know if I can clarify anything, and/or if anyone else is having the same type of issue.