Atom has completely broke and I can't fix it


So I deleted something on accident and Atom has been completely broken since. I can’t install packages, themes, or anything. I can make new projects and that’s pretty much it. I’ve also uninstalled and reinstalled it multiple times.

When I try to open the theme editor or package installer I receive this error:
Unable to open ‘atom:\config\themes’
Unable to open ‘atom:\config\install’

This is currently what Atom looks like:


What happens if you start Atom from the command line with atom --safe?